PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PDK_30s687281g002
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
Family HSF
Protein Properties Length: 313aa    MW: 35371.8 Da    PI: 5.3341
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PDK_30s687281g002genomePDKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind99.14.1e-311859102
                        HHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXXXX CS
       HSF_DNA-bind   9 iledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekikrk 100
                        ++ed+e++ ++sws+  nsfvv+d+++fa+++Lp+yFkh+nf+SF+RQLn+YgF+kv+ ++         weF++  F  g+k+ll++ikr+
  PDK_30s687281g002   1 MVEDPETDAVVSWSRARNSFVVWDSHRFATTLLPRYFKHNNFSSFIRQLNTYGFRKVDPDR---------WEFANGGFLGGQKQLLRNIKRR 83 
                        89********************************************************999.........*********************9 PP

                        XX CS
       HSF_DNA-bind 101 ks 102
                        ++
  PDK_30s687281g002  84 RN 85 
                        86 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004159.2E-48183IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.107.8E-33183IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004474.7E-28183IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467851.03E-29183IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000562.1E-103244IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043403357IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.1E-104557IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009644Biological Processresponse to high light intensity
GO:0010200Biological Processresponse to chitin
GO:0010286Biological Processheat acclimation
GO:0034605Biological Processcellular response to heat
GO:0034620Biological Processcellular response to unfolded protein
GO:0042542Biological Processresponse to hydrogen peroxide
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0071456Biological Processcellular response to hypoxia
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 313 aa     Download sequence    Send to blast
MVEDPETDAV VSWSRARNSF VVWDSHRFAT TLLPRYFKHN NFSSFIRQLN TYGFRKVDPD  60
RWEFANGGFL GGQKQLLRNI KRRRNVGQSS NQQQQQGGGA CVELGKFGLE AEVDRLRRDR  120
NVLMLEIVKL RQQQQSSRSL LLEMERRMQG TERKQQRTMA FLARALKNPL FIRQLLVRSQ  180
QMKQLPGAGR KRRLPATPSS ENLRAGEEDE SAIQSEMESL LSALDSGVGG SSIGRKNEQT  240
FDAMDQSSGA ITDLIWEDLL LNESLLVGNE AAQGEQPGME VAPEELAAEQ IEWGDEVQDL  300
VDQMGYLASS PEP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A3e-2518327120Heat shock factor protein 1
5d5v_D3e-2518336129Heat shock factor protein 1
5d5v_B3e-2518336129Heat shock factor protein 1
5d5u_B3e-2518336129Heat shock factor protein 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1114119RLRRDR
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008782512.10.0PREDICTED: heat shock factor protein HSF30-like
SwissprotP411521e-108HSF30_SOLPE; Heat shock factor protein HSF30
TrEMBLA0A0B2R8391e-118A0A0B2R839_GLYSO; Heat shock factor protein HSF30
TrEMBLI1JTX51e-118I1JTX5_SOYBN; Heat shock transcription factor HSFA2
STRINGGLYMA04G05500.31e-118(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP30837231
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G26150.12e-88heat shock transcription factor A2